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SRX3059863: Metagenomic sequencing of 3% NaCl (w/v) perchlorate enrichment
1 ILLUMINA (Illumina HiSeq 2000) run: 30.3M spots, 6.1G bases, 2.7Gb downloads

Design: Metagenomic DNA was extracted with the MoBioRNAPowerSoil Kit with the DNA Elution Accessory Kit then sheared and sequenced using the Illumina HiSeq 2000 at the Vincent J. Coates Sequencing Laboratory
Submitted by: University of California, Berkeley
Study: Genome-resolved metagenomics of marine perchlorate-reducing communities
show Abstracthide Abstract
Metabolic interactions and genetic exchange are important features of microbial communities. We performed genome-resolved metagenomics to characterize communities performing dissimilatory perchlorate reduction, a metabolism that involves reactive chlorine species and horizontal gene transfer of a conserved functional gene cluster. Distinct communities from source marine sediment and enrichments of varying salinity were recovered, and enriched populations included perchlorate-reducing bacteria as well as putative interacting populations of chlorate-reducing, sulfur-reducing, and fermentative microorganisms. Vectors for perchlorate reduction genes and a novel gene cluster involved in perchlorate reduction were also identified.
Sample: Metagenome from 3% salinity (w/v NaCl) perchlorate enrichment
SAMN07138135 • SRS2405816 • All experiments • All runs
Library:
Name: BM3
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 30.3M spots, 6.1G bases, 2.7Gb
Run# of Spots# of BasesSizePublished
SRR589428830,296,8946.1G2.7Gb2017-08-03

ID:
4344138

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